Systems Biology of Human Metabolism and Gut Microbiome

Welcome to the course! This webpage will be the main website for all informations and materials throughout the course. If you have any questions/requests, contact muhammad.arif [at] scilifelab.se

Course Syllabus

If you need more information about the aim and expected outcome, also the syllabus in general, please refer to the course sylabus website.

Course Location

Air Room @ Science For Life Laboratory (SciLifeLab)

Closest Bus Stop: Karolinska Institutet Biomedicum

Google Maps: Tomtebodavägen 23a, 171 65 Solna

Pre-course Preparation

In order to ensure the smoothness of the workshop, please follow the instruction in this Workshop Preparation page. Please do this as soon as humanly possible and contact us if you find any problem during the preparation

On top of that, please do the preparation for GEM in MATLAB

OBS: This step might take a while to be completed, so please do it BEFORE the course.

Course Schedule

Course Material

Topic	Teacher	Slide	Workshop
Introduction to Systems Biology	Adil Mardinoglu	Part 1 Part 2	N/A
Proteomics	Fredrik Edfors	Link	Link
Transcriptomics	Muhammad Arif	Link	Link
Metabolomics	Abdellah Tebani	Link	Link
Metagenomics	Ozlem Altay	Link	Link
Genome Scale Metabolic Modelling	Cheng Zhang	Link	Link
Transcript-centic and REOs analysis	Xiangyu Li	Link	N/A
Multi-Omics Integration	Rui Benfeitas	Link	HTML notebook

Mini Seminar

Topic	Keynote Speaker	Slide
Topic 1	Lukas Käll	Link
Topic 2	Mathias Uhlén	Link

Student Presentations

In this course, we will have students presentations. All group has 15 minutes to present one state-of-the-art paper from Systems Biology field, followed by 15 minutes Q&A. You will be given the group distribution by first day of the course and also you will have 90 minutes on Thursday to finish the presentation

Topic	Link to paper
Group 1	Link
Group 2	Link
Group 3	Link
Group 4	Link
Group 5	Link